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      <image:title>Home - Sriram is named as MIT Technology Review's Top Innovators under 35</image:title>
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      <image:title>Home - Sriram wins Machine Learning Award from Dreyfus Foundation</image:title>
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      <image:title>Home - News article on our recent Cell paper on antibiotic resistance</image:title>
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      <image:title>Home - Our study on T-cells &amp; pathogen metabolism is published in Cell</image:title>
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      <image:title>Home - Our antibiotic resistance research featured in Michigan Engineer</image:title>
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      <image:title>Home - News article on MAGENTA</image:title>
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      <image:title>Home - Deep learning AI &amp;amp; Antibiotics</image:title>
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      <image:title>Home - Finding metabolic tradeoffs with SCOOTI</image:title>
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  <url>
    <loc>https://systemsbiologylab.org/publications</loc>
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    <lastmod>2026-04-01</lastmod>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>Interplay of metabolism and drug resistance in infections (tuberculosis) and cancers</image:caption>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>Inferring metabolic objectives and tradeoffs with SCOOTI</image:caption>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>Using Multimodal AI to Guide Tuberculosis Treatment</image:caption>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>Quiescence depth prediction using machine learning and genome-scale metabolic modeling</image:caption>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>CARAMeL combines machine learning with metabolic modeling to predict how drug interactions are impacted by both extrinsic and intrinsic metabolic heterogeneity</image:caption>
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      <image:caption>Predicting PTM regulation using CAROM</image:caption>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>Overview of Next-generation GEMs that incorporate multiple regulatory mechanisms</image:caption>
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    <image:image>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Simulating efficacy of Tuberculosis drug regimens at the molecular, cellular and granuloma scale</image:caption>
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    <image:image>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Predicting regulators of bee behavior using AI</image:caption>
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    <image:image>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Studying metabolic-epigenetic interactions using systems biology</image:caption>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Harnessing AI to find antibiotics against pathogens like MRSA (Source: NIAID)</image:caption>
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      <image:title>Sriram Chandrasekaran Publications - Make it stand out</image:title>
      <image:caption>Predicting both drug interactions and regulators of drug interactions using INDIGO</image:caption>
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      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1551465685951-N5Q41H90Z02LP83FY9UJ/histone_acet_metabolism_figure1.jpg</image:loc>
      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Network model of cancer metabolism and histone acetylation</image:caption>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Overview of MAGENTA to predict the impact of environment on drug interactions</image:caption>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
      <image:caption>Metabolic pathways targeted by granzyme-B</image:caption>
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    <image:image>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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    <image:image>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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      <image:title>Sriram Chandrasekaran Publications</image:title>
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  <url>
    <loc>https://systemsbiologylab.org/software</loc>
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    <lastmod>2025-11-18</lastmod>
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      <image:caption>INDIGO</image:caption>
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      <image:title>Software and Datasets</image:title>
      <image:caption>ASTRIX</image:caption>
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  <url>
    <loc>https://systemsbiologylab.org/contact</loc>
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    <lastmod>2017-08-08</lastmod>
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      <image:title>Contact</image:title>
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  <url>
    <loc>https://systemsbiologylab.org/research</loc>
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    <lastmod>2025-08-16</lastmod>
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      <image:title>Sriram Chandrasekaran Research</image:title>
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      <image:title>Sriram Chandrasekaran Research - Make it stand out</image:title>
      <image:caption>Reconstructing metabolic &amp; regulatory networks using PROM and Recon8D</image:caption>
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    <image:image>
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      <image:title>Sriram Chandrasekaran Research</image:title>
      <image:caption>Antibiotic resistance summarized by XKCD</image:caption>
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  <url>
    <loc>https://systemsbiologylab.org/bio</loc>
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    <priority>0.75</priority>
    <lastmod>2026-02-03</lastmod>
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      <image:title>Sriram Chandrasekaran</image:title>
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  <url>
    <loc>https://systemsbiologylab.org/home-1</loc>
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    <priority>0.75</priority>
    <lastmod>2018-05-13</lastmod>
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      <image:title>Home</image:title>
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    <image:image>
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      <image:title>Home - Our study on stem cell metabolism dynamics is published in Cell Reports</image:title>
      <image:caption>Our study on stem cell metabolism dynamics is published in Cell Reports</image:caption>
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    <image:image>
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      <image:title>Home</image:title>
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      <image:title>Home</image:title>
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      <image:title>Home - Modeling stem cell metabolism</image:title>
      <image:caption>Our study on stem cell metabolism dynamics is published in Cell Reports</image:caption>
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  </url>
  <url>
    <loc>https://systemsbiologylab.org/lab-members</loc>
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    <lastmod>2026-02-03</lastmod>
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      <image:title>Team</image:title>
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    <image:image>
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      <image:title>Team</image:title>
      <image:caption>Sriram Chandrasekaran, Associate Professor</image:caption>
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      <image:title>Team - Margaret Reuter, Postdoctoral Fellow</image:title>
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      <image:title>Team - Nazreen Pallikkavaliyaveetil, Postdoctoral Fellow</image:title>
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    <image:image>
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      <image:title>Team - Yuntao Lu, Postdoctoral Fellow</image:title>
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    <image:image>
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      <image:title>Team - Carolina Chung, Research Associate</image:title>
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      <image:title>Team - Harkirat Singh Arora, PhD student</image:title>
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    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1589237161032-F0FAOYAWVL861ZJ62WPX/dawei.jpg</image:loc>
      <image:title>Team - Da-Wei Lin, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1607030104533-MGVTT8ZTVSZRNSBCMIGJ/Photo.jpeg</image:loc>
      <image:title>Team - Andrea Valenzuela, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1673458879186-IAWP0SFG0YZQPT3L1U0H/Katherine_Lev_Headshot.jpg</image:loc>
      <image:title>Team - Katherine Lev, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1704488496164-CSKH5OWYXRGS6B9KYV5N/Headshot+-+Annie+Schiro.jpg</image:loc>
      <image:title>Team - Annie Schiro, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1645890856593-PZMSHD85VX5YEU1QXWUW/PXL_20210220_050341372.PORTRAIT_6.jpg</image:loc>
      <image:title>Team - Ryan Schildcrout, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1711919821618-SQSPXO25ANOK2B5R2EDX/Bretton+Headshot.jpg</image:loc>
      <image:title>Team - Bretton Badenoch, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1768506707622-DJSZMIQE7YKE1MS7SONF/Youzi_Bi_profile.png</image:loc>
      <image:title>Team - Youzi Bi, PhD student</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1704771696061-2V16JYQ02ZVVSJD0V2QY/b324bb1d-24f9-41fb-9dd3-e32362d1002e.jpg</image:loc>
      <image:title>Team - Prakruthi Manjunatha, Research Assistant</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753493561578-TX4PJ7TZIG0JG5VAKWZO/IMG_6589.jpg</image:loc>
      <image:title>Team - Shomeek Chowdhury, Research Associate</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753493680162-H2UXJ4GZUPR25CUWKPO5/Photo_Badger.png</image:loc>
      <image:title>Team - Nickles Badger, Research Associate</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1668458271870-GWBWGMRMCGY6UJASSLWM/IMG_2790+%281%29.jpg</image:loc>
      <image:title>Team - Scott's PhD thesis defense</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1637175123107-C5P2FRDL0KXM6166RCTI/20211116_194859.jpg</image:loc>
      <image:title>Team - Lab holiday dinner 2021</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1542048295623-AUDA86AGGFXW25H48ID5/20181011_165859.jpg</image:loc>
      <image:title>Team - Impromptu lab photoshoot 2018</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1668458272971-X4T81S37ABJAU9K4KN1B/IMG_2784.jpg</image:loc>
      <image:title>Team - Celebrating Scott's graduation</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1576279321889-4CEQIMWCFF5FO88YCY46/20191211_184538.jpg</image:loc>
      <image:title>Team - Lab holiday dinner 2019</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1602982986808-J7LT9I490AHBR80Z9AIA/20200910_134401.jpg</image:loc>
      <image:title>Team - Outdoor picnic 2020</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1576279389168-VLA086HRIPW3OJLCURDO/sriramlab_dinner.jpg</image:loc>
      <image:title>Team - Lab holiday dinner 2017</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1542048491935-W6PIRZQADY9PBP68TY9F/20180424_132221.jpg</image:loc>
      <image:title>Team - Suraj's Master's thesis defense</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1550284751625-EX7ELT5VU1Y1SOVPXYSY/IMG-20190215-WA0000.jpg</image:loc>
      <image:title>Team - Lab holiday dinner 2018</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1646852002067-K8RPLVO95WTAYCMF4NVX/20220305_145836.jpg</image:loc>
      <image:title>Team - @ Domino's petting farm 2022</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1648477057155-SCRHHYHMDGMU3FI9Z6V3/20220325_154453.jpg</image:loc>
      <image:title>Team - Lab Happy hour 2022</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1692108851555-EO4WVZAKHS9R4OQS19Q0/IMG_3738.jpg</image:loc>
      <image:title>Team - Carolina's PhD thesis defense</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1704488689180-OOD7PJYLQ4YYI7MK2YIO/20231214_184918+%281%29.jpg</image:loc>
      <image:title>Team - Lab holiday dinner 2023</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753282490494-VWMO6ZOJVOFKFHKDL424/IMG-20240425-WA0020+%282%29.jpg</image:loc>
      <image:title>Team - MI DNA Day 2024</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753282488624-KG2GJYNDO51TZA6VRAB4/20241205_181714+%281%29.jpg</image:loc>
      <image:title>Team - Lab holiday dinner 2024</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753282491221-C3TRYZYW5SMAY1UP7OXZ/20250515_174032.jpg</image:loc>
      <image:title>Team - Lab ice cream social 2025</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753282492144-GWKLFSQTWHNWKL3JOGXO/IMG_20250703_121441.jpg</image:loc>
      <image:title>Team - Dawei's PhD defense 2025</image:title>
      <image:caption />
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1753282494898-NSGPCYF73R0TQYWWO0N8/20250703_130720.jpg</image:loc>
      <image:title>Team - Celebrating Dawei's PhD defense 2025</image:title>
      <image:caption />
    </image:image>
  </url>
  <url>
    <loc>https://systemsbiologylab.org/research-summary</loc>
    <changefreq>daily</changefreq>
    <priority>0.75</priority>
    <lastmod>2019-11-04</lastmod>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1557183109840-94B1WKCXJ9J4BP0YIRWS/metabolism_histone_model.jpg</image:loc>
      <image:title>Research summary</image:title>
    </image:image>
  </url>
  <url>
    <loc>https://systemsbiologylab.org/ai-bme-syllabus</loc>
    <changefreq>daily</changefreq>
    <priority>0.75</priority>
    <lastmod>2024-12-11</lastmod>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1560715959822-UGR2CRREHU1R7CZ02L1U/image-asset.jpeg</image:loc>
      <image:title>AI BME SYLLABUS</image:title>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1589218736310-WHS1XIO8V7HRMDSZUCZW/machine_learning_2x.png</image:loc>
      <image:title>AI BME SYLLABUS</image:title>
      <image:caption>Source: XKCD</image:caption>
    </image:image>
  </url>
  <url>
    <loc>https://systemsbiologylab.org/metoncofit</loc>
    <changefreq>daily</changefreq>
    <priority>0.75</priority>
    <lastmod>2019-10-11</lastmod>
  </url>
  <url>
    <loc>https://systemsbiologylab.org/lectures</loc>
    <changefreq>daily</changefreq>
    <priority>0.75</priority>
    <lastmod>2021-10-15</lastmod>
  </url>
  <url>
    <loc>https://systemsbiologylab.org/all-publications</loc>
    <changefreq>daily</changefreq>
    <priority>0.75</priority>
    <lastmod>2026-03-12</lastmod>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1472603566154-1C3TRESU9VUU89U7EN41/msb_cover_from_cover_5.cover-source.jpg</image:loc>
      <image:title>All Publications</image:title>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1659197302991-8HOLXBOU58L1CI55U1O5/caramel_overview.jpg</image:loc>
      <image:title>All Publications - Make it stand out</image:title>
      <image:caption>CARAMeL combines machine learning with metabolic modeling to predict how drug interactions are impacted by both extrinsic and intrinsic metabolic heterogeneity</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1641312450761-5CVJ3HUPCXVA2GHXC7PV/carom_abstract_2.png</image:loc>
      <image:title>All Publications - Make it stand out</image:title>
      <image:caption>Predicting PTM regulation using CAROM</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1634314623063-6S1MCI8RLCCO9R43LPKQ/Picture1_caramel.jpg</image:loc>
      <image:title>All Publications - Make it stand out</image:title>
      <image:caption>Overview of Next-generation GEMs that incorporate multiple regulatory mechanisms</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1618709411823-N4HRDNZ637F2PEUFK1DS/indigo_gransim.jpg</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Simulating efficacy of Tuberculosis drug regimens at the molecular, cellular and granuloma scale</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1606231111815-4OW7O4P124CUW82V1LGU/colorized.png</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Predicting regulators of bee behavior using AI</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1595625683671-GWW6W3TB9WZQL51EWGWA/graphical_abstract_image.png</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Studying metabolic-epigenetic interactions using systems biology</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1589216123731-RQZ2LD5GAAOEQ935JNMA/8436193898_ce1acc5bb9_k+%281%29.jpg</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Harnessing AI to find antibiotics against pathogens like MRSA (Source: NIAID)</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1621520932455-QOESYZJ71ZP0R3JJBPUC/indigo_mtb.jpg</image:loc>
      <image:title>All Publications - Make it stand out</image:title>
      <image:caption>Predicting both drug interactions and regulators of drug interactions using INDIGO</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1551465685951-N5Q41H90Z02LP83FY9UJ/histone_acet_metabolism_figure1.jpg</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Network model of cancer metabolism and histone acetylation</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1618761237307-TP20QKF1E9IG5FQ1DX4A/magenta_overview.jpg</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Overview of MAGENTA to predict the impact of environment on drug interactions</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1509135825263-30YE3Y2UECBW1U11WNAR/Metabolic+pathways+targeted+by+granzymes</image:loc>
      <image:title>All Publications</image:title>
      <image:caption>Metabolic pathways targeted by granzyme-B</image:caption>
    </image:image>
    <image:image>
      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1512585311453-M83IB62KZ18OVZNMT2IR/stem+cell+metabolism</image:loc>
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    </image:image>
    <image:image>
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    <image:image>
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      <image:loc>https://images.squarespace-cdn.com/content/v1/57b4dba3440243b634e87c20/1472424331453-BOO1FF6UT9MW6UYDXK76/image-asset.jpeg</image:loc>
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  </url>
</urlset>

